rs31079616 SNP Detail

Summary

• ID
  rs31079616
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149323931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATTCCACTT CATAAATTAT TCAAGACATA
  ACTCCACTGA CTTACATGTT TCTTTGTAAA TGTTCCCTTC CCTCAAGTAT GCAGGCTGTT
  ACTAACCTTA GATGTATATT TTATTTCAGA TAAAGTATGT GAAAATCTCA ATATTACATA
  R
  TGCAATGTAC TTTCATTGGA TAGATGCCTT AAGAATTTCT TGACCTTTTA AATTAAAATG
  TATAATATTC CCAATAAAAT ATATATTTTT CTGCACATGG AACAACATGA GGGCCATTGA
  ATTTGAGTAC TGAAAGGTTG ATCAGACTAA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss49701552	NES13068201	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A	G	G	G		A	G	A		A
ss320039532	CHEV_1_151295313	CHEVERUD	SCREENING_POP	f	SNP									G				A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs31079616					SNP	G	G	A	G	A	G	G	G	G	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49701552	NES13068201	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149323931 () rs orientation: forward

Symbol	Name	Function Class
Gm29398	predicted gene 29398	within coordinates
Rr30991	regulatory region 30991	271 bp proximal
Tssr14116	transcription start site region 14116	1759 bp downstream
Tssr14117	transcription start site region 14117	1780 bp downstream