rs31079652 SNP Detail

Summary

• ID
  rs31079652
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:74026265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTGCAAATTT CAGAGCCTGG AACTCACTTG GCGTTCTCTA GCACCCTCTC GTGGTGAACA
  TGAGTATCTC TCTCACGTCT CATTTCTAGC CCAAGCATCA AGTAAACACC CCTAACAACT
  TACTGAGGCA AACCTTACTT ATGACTATTC TCATAGACCC TAATATATTC TCAATCTCTC
  TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTT
  TCTCTCTCTC TCTCTCTCTC TCCCTCCCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  W
  CACACACACA CACACACACA CAGAGGAAAC AGTAAAAGTT TGATAACTAC AGTACTTATT
  TTATTTCTTC CTAAACGTAT GGAATTTTGT ATATTAACTT CTTGACTTGG GATCTGAGAT
  AATTAACTTC CAATAAGTAT CCTAACTCTA AGCTGGTTTG TAGTTGGGTT TTCGTTTCTT
  TAGCGATTTT ATTTATGCTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TTGCTAGAGA TTAGACCTGG GGTCTCCTGC ATGCTAAGCA GTCAACAGAC
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J
ss44993551	mCV23137741	ABI	CRAMUS_MOUSE	f	SNP	A	T
ss144681607	ENSMUSSNP546798	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J
rs31079652					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74026265 () rs orientation: forward

Symbol	Name	Function Class
Rr17341	regulatory region 17341	65 bp distal
Rr27623	regulatory region 27623	89 bp distal
Rr34548	regulatory region 34548	104 bp proximal
Tns1	tensin 1	within coordinates
Tssr12229	transcription start site region 12229	304 bp upstream