rs31080626 SNP Detail

Summary

• ID
  rs31080626
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172032552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTG AACTTGGTAA GACTCTGTGT
  Y
  CCCACCTAAG TACCCAGAGC TACCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44993355	mCV23614967	ABI	CRAMUS_MOUSE	f	SNP	C	C						T
ss49752943	NES13040987	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	C		T	C	C		T	C	C	C		C
ss120007332	PARCsnp_1.17744	PARC_SEQ	INBRED	f	SNP								T		C
ss120010231	PARCsnp_1.07383	PARC_SEQ	INBRED	f	SNP								T		C
ss146183801	ENSMUSSNP5154610	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss320123192	CHEV_1_174135116	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31080626					SNP	C	C	C	C	C	T	C	T	T	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752943	NES13040987	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172032552 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1038	CpG island 1038	1223 bp proximal
Pea15a	proliferation and apoptosis adaptor protein 15A	within coordinates
Rr423483	regulatory region 423483	42 bp distal
Rr423484	regulatory region 423484	within coordinates
Rr423485	regulatory region 423485	492 bp proximal
Rr423486	regulatory region 423486	1809 bp proximal
Tssr294	transcription start site region 294	1643 bp downstream
Tssr295	transcription start site region 295	1695 bp downstream
Tssr296	transcription start site region 296	1771 bp downstream
Tssr297	transcription start site region 297	1802 bp downstream
Tssr15164	transcription start site region 15164	1669 bp downstream
Tssr15165	transcription start site region 15165	1699 bp downstream
Tssr15166	transcription start site region 15166	1790 bp downstream