rs31080938 SNP Detail

Summary

• ID
  rs31080938
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:47774843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAT AAAAAATAAT TTAGAGAAGC
  Y
  TAGGGTAGAG TCTCCCCCTC CTCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss44993258	mCV22795960	ABI	CRAMUS_MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs31080938					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47774843 () rs orientation: forward

Symbol	Name	Function Class
Cfap43	cilia and flagella associated protein 43	within coordinates
Cpgi11037	CpG island 11037	351 bp proximal
Tssr159755	transcription start site region 159755	703 bp downstream