rs31081687 SNP Detail

Summary

• ID
  rs31081687
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10413297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCCTCAGTT TCCTCATTTG TCTTCCTTTG GTCCTTTTCT
  GAGCTGAGAA AAAGACTAGG AAATCCTACT CATACAAGAT GTTTTTAATG TCCTGGGAGG
  R
  GAAGCTGTGG GGCAGTGGCA TGGAGGCACA TGCCTCTTCC CTAAAATGGC AGAGATGGTA
  GTAAGGTGGA GATCCCAGGG GTGACGGTCT TGTAGCCCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44993892	mCV22700100	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A	G
ss146042373	ENSMUSSNP2016194	ENSEMBL	ENSEMBL_Sanger	f	SNP			G		G
ss325720394	CHEV_19_10510423	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31081687					SNP	A	A	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10413297 () rs orientation: forward

Symbol	Name	Function Class
Rr544111	regulatory region 544111	1486 bp distal
Rr544112	regulatory region 544112	within coordinates
Rr544113	regulatory region 544113	181 bp proximal
Rr544114	regulatory region 544114	1671 bp proximal
Rr544115	regulatory region 544115	1722 bp proximal
Syt7	synaptotagmin VII	within coordinates
Tssr155051	transcription start site region 155051	727 bp downstream