rs31081736 SNP Detail

Summary

• ID
  rs31081736
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:38107194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTATA GAGGGCACCT CATTCTCGTC
  R
  TCAGCTTCTT GATAACTGAT AGCAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44993991	mCV27587547	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss146361615	ENSMUSSNP4951891	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss325801297	CHEV_19_38193236	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31081736					SNP	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:38107194 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10802	CpG island 10802	478 bp proximal
Rbp4	retinol binding protein 4, plasma	Intron
Rr547239	regulatory region 547239	1167 bp proximal
Tssr156244	transcription start site region 156244	1984 bp downstream
Tssr156245	transcription start site region 156245	412 bp downstream
Tssr159111	transcription start site region 159111	1945 bp upstream
Tssr159112	transcription start site region 159112	1895 bp upstream
Tssr159113	transcription start site region 159113	1830 bp upstream
Tssr159114	transcription start site region 159114	427 bp upstream
Tssr159115	transcription start site region 159115	371 bp upstream
Tssr159116	transcription start site region 159116	269 bp upstream
Tssr159117	transcription start site region 159117	255 bp upstream