rs31082292 SNP Detail

Summary

• ID
  rs31082292
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:12912217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACTCTCT ACATGGATTT
  TTTCTTCCTT ACTTTGCTCC TGGATTATTA ATCTACTTAT CTACGGGTTT ATGATTGACT
  TGGTAGTAGC CAAAACCAAT ATGACTCTCG TTGGCCGTGG ATTTTCACAT GGTTACTGTC
  AAAGAAAGAA ATTTGGGAAA CAAAATTCAG AATGGCTTTT CAGCTTTCTC ATCATTCATG
  M
  TTTCTTCTAT ATGTCTGTCA TGATGTGGGC CAGCCTCTAC ATGGTTATTT TCCTATACAG
  ACACCGCAAG TTAGCCCAGC ATCTCCACAG CCCAAACCTT TCCTCCCAGT CATCTCCTGA
  GCGCAAAGCC ACTCACAGCA TCCTGTTTCT GGTGAGCTGC TTTGTGTTAA CTTATTGGTT
  GAACAACTTC ATCACCTTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45994464	mCV24389936	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	A	A
ss148343612	ENSMUSSNP5873912	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C		A
ss322107362	CHEV_7_13763639	CHEVERUD	SCREENING_POP	f	SNP						C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31082292					SNP	A	A	C	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12912217 () rs orientation: forward

Symbol	Name	Function Class
Gm4879	predicted pseudogene 4879	613 bp upstream
Rr380415	regulatory region 380415	within coordinates
Vmn1r88	vomeronasal 1 receptor, 88	Coding-NonSynonymous