rs31083036 SNP Detail

Summary

• ID
  rs31083036
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:73970387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCACTCACT GGGAAAAATA AAAGCTTGTG CCAAAGTAAA
  AAAGGCCAGT ACTGTCCACC CTGATAAAAT GAAGGCATAT AGGTGTGGGG AGAAGGCCTC
  Y
  GTGGTATAAC ACTTGCCTAG CATGCACAAG GCCCAAGGAT CAATCCAGCT CACAAAACAT
  GCATGCATAC ATACATACAT ACATACATAA AATATTAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss44993761	mCV22554867	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss144680546	ENSMUSSNP3086324	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31083036					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:73970387 () rs orientation: forward

Symbol	Name	Function Class
Rr34544	regulatory region 34544	within coordinates
Rr371521	regulatory region 371521	1077 bp upstream
Tns1	tensin 1	within coordinates
Tssr12217	transcription start site region 12217	1870 bp upstream
Tssr12218	transcription start site region 12218	497 bp upstream
Tssr12219	transcription start site region 12219	433 bp upstream
Tssr12220	transcription start site region 12220	400 bp upstream