rs31083259 SNP Detail

Summary

• ID
  rs31083259
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127688383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATAGTATG TGTACAAAAA
  CAGCTCTATC TATGTGACAT TGCATGGATT TTTAAATTTC ATTTGCAGGT TGTAAAAAAA
  AAAAAAAAAA AAAAAACCAA AACAAAACCC TAGATGATAG GCTTTGTGAT ACTGTTGCCA
  AACGATTGAT CACAAAAGTT TGCTTTCTGC ATTATCGAGT TGGGCTGTAC CAGTTCTGAG
  Y
  TCCTGATAAG AAGTTCCCAG GTGCTGATAT AGTAGGATCT CAGGTGTGTT TTTTTCCATG
  AGTGTGAGGA CTTAAGAGTA TACAGGTAAA GTATGTAGCA AAATTACAAC GACACAAGCA
  ACATGCAGAA GCAGGCAGGA AAATGAAATT TCATAGTACA ATAGAGGAAG CAGGCATGTG
  ATAGGGTATC TATTCTCTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45496091	mCV23455382	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss135874457	ENSMUSSNP2877231	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
ss320957985	CHEV_3_127597652	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31083259					SNP	T	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127688383 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	980 bp proximal
Fam241a	family with sequence similarity 241, member A	Intron
Rr398009	regulatory region 398009	1539 bp upstream
Rr584895	regulatory region 584895	427 bp distal
Rr584896	regulatory region 584896	1264 bp proximal
Rr584897	regulatory region 584897	1544 bp proximal
Tssr35606	transcription start site region 35606	126 bp upstream
Tssr35607	transcription start site region 35607	774 bp downstream
Tssr35608	transcription start site region 35608	1486 bp downstream
Tssr35609	transcription start site region 35609	1513 bp downstream
Tssr35610	transcription start site region 35610	1537 bp downstream