rs31085345 SNP Detail

Summary

• ID
  rs31085345
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:63545727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCACAAGT GTGGAAGGGG
  GATGTTTAGT TCTAGGTCCC ATCAGTCTCT GCCACAACCC TGTTCTGTGG AAAGCGTGTA
  AAACTAATCA ATACCCTAAG AGTCATGAGT TTCTTATACT CACCAGCTGT CCACACTGAT
  AGCCCGTTCT TACTTTCCAA TATCAGAACT GCCATCCCAA GGAACAGTTG GTCCGGGGAA
  Y
  GACATTACCA GTGCTACCAA GTGAGCAGGT CTTCACACCT CCATTAATAT AATCAGGGGG
  GAAACCCACA GGTAGGAAGA GGCCCATCTT TCAGGTGACT CTAGATCGGA TCAAATTGGC
  AACTGAGATT CACCATCACA TAGTCTCAAG GGACTTTGGA TCTCATCAAG GCCAGGAAAG
  TGGGGACACA ACTTAAGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48014699	NES12049658	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31085345					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48014699	NES12049658	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:63545727 () rs orientation: forward

Symbol	Name	Function Class
Rr1380	regulatory region 1380	959 bp proximal
Rr390832	regulatory region 390832	1645 bp upstream
Rr406926	regulatory region 406926	215 bp proximal
Rr503259	regulatory region 503259	727 bp proximal
Rr503260	regulatory region 503260	1593 bp proximal