rs31085347 SNP Detail

Summary

• ID
  rs31085347
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:63546929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGGACCT AAAGGCAGAG
  GAAAGAGGGA ACAGATGGTT GTGAAGTACC TGGATTGGGA TTCTGCTGGC AATACACCTT
  ACTGAACACT CAGCACAATC ACACAGGACA AATTGCCTTA TGGTTCACAC TATGTGCAGG
  GGAAGAAAGG GGATTCAGAG AGACAAGGGG AGAGGCAGGT TGGAAAGGCC AGACCATTCT
  Y
  CATAAGCCCC ACCTTTCTAA GCCACCCTCA ACTTTGGCCA TTGGGCTTAC ACAGGGGGAA
  AGAATCAGAA TGTAGACCAG ACCGTCTGTA GGTGCCATGG AAAATATTTT CTAAGCATGC
  TACTTCTCAG TGGCATGGAA GTTACTGTAA CAACCACGAT ACTGTTCCTG AACAAAAAGA
  ACGTAAGAAA AACTGTTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48014701	NES12049621	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31085347					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48014701	NES12049621	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:63546929 () rs orientation: forward

Symbol	Name	Function Class
Rr1380	regulatory region 1380	within coordinates
Rr390832	regulatory region 390832	443 bp upstream
Rr406926	regulatory region 406926	within coordinates