rs31085352 SNP Detail

Summary

• ID
  rs31085352
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:63548410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCCTAAT GCTGTGACCT
  TTTAATACAG TTCCTCATGT CCTTATGTTG TGGTGACCCC CACCCCAACC ATTTTCATTG
  CTACTTCACA ACAGTAATTT TGCTAATGTT ATGAACTGTA ATGTAAATAT CTAATATGTA
  GGTTGTCTGA TATGTGACCC CTGTGGGGGT TGTAACCCAT AGGTTGAGAA TTGCTGTGCT
  R
  TTTGAATGTA AGATACCGTC ATTACTTGGG CCTTCACTGG TCTGGAGAGG TGATGAAGCC
  TTTAGAATAT AGGCCCTAGC TAATAGATGT AGACTGTAGA AGGCAGGCCT TTAGAGTTAT
  AGCCCAAACC TGGTTTCCGC CTGAGGTCTT AGCATCCCAG TCAGTGGCAT AGGACAAGCT
  GTTACTATAA GTTCTTCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39396196	mCV24651695	ABI	CRAMUS_MOUSE	f	SNP		A	G					A
ss48014707	NES12049573	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	A	A		A	A	A	A	A	A	A	A	A
ss148012078	ENSMUSSNP127740	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31085352					SNP	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48014707	NES12049573	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:63548410 () rs orientation: forward

Symbol	Name	Function Class
Rr1380	regulatory region 1380	312 bp distal
Rr390832	regulatory region 390832	within coordinates
Rr406926	regulatory region 406926	within coordinates