rs31085838 SNP Detail

Summary

• ID
  rs31085838
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9307251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCAAATGTT AGCTGACTAC TAAGCTAAAC CAAATAATAC
  GAAAGTTATC TATTTCATCC TTGGTTGACG CAAAAGTGTG AAATTCTGCT TTTCCCCCAA
  R
  GGCCATATCA CCCTTTAAGA AAGGCAAATT CATACTACAG GGAACCTGTA CTAGTTTCCT
  TCCTTGTCTC TGTCACAAAG TATTACGATA AAATCTTTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46478903	mCV22743168	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	A
ss134086364	ENSMUSSNP621436	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31085838					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9307251 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	within coordinates
Rr406085	regulatory region 406085	165 bp downstream
Rr689864	regulatory region 689864	290 bp proximal
Tssr160523	transcription start site region 160523	1534 bp upstream
Tssr162909	transcription start site region 162909	1066 bp upstream
Tssr162910	transcription start site region 162910	1019 bp upstream
Tssr162911	transcription start site region 162911	981 bp upstream
Tssr162912	transcription start site region 162912	1595 bp downstream