rs31086110 SNP Detail

Summary

• ID
  rs31086110
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28390995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCACG TGGTTCACTC AGGGGCTCCC
  Y
  GGAGTCTTAC ACAGGTTAAA ATAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45994721	mCV24575536	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C	C
ss148635365	ENSMUSSNP878752	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T				C
ss322125995	CHEV_7_29476589	CHEVERUD	SCREENING_POP	f	SNP						T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs31086110					SNP	T	T	T	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28390995 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18715	CpG island 18715	1489 bp proximal
Fbxo27	F-box protein 27	1279 bp upstream
Rr644337	regulatory region 644337	1097 bp proximal
Rr644338	regulatory region 644338	1959 bp proximal
Tssr65494	transcription start site region 65494	1246 bp upstream
Tssr65495	transcription start site region 65495	1285 bp upstream
Tssr65496	transcription start site region 65496	1433 bp upstream
Tssr65497	transcription start site region 65497	1442 bp upstream
Tssr65498	transcription start site region 65498	1462 bp upstream