rs31086319 SNP Detail

Summary

• ID
  rs31086319
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:63548793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTATAAGT TCTTCCACCA
  CGAACCAACC CATGCCAGTA ACTGCTTTCT CCACCACCAT CAGTAGGCAA AGAGATGCTA
  AGCTATGGTT GAAAAATCAG CATTTTGTAA GTAGAAACAT GCCCGGGCAA ATGTTTTTTC
  CTGAAGCCAG TGGGATAGGT TTCAAAGAAG TATTTGAATT GAAATGGGAG GACATAAGAG
  W
  TGATAAAATT CACATGGAGT AGAGGGTGGC GAGAGTCCCC CGAGCACAAA GAAGAGGTCA
  TCAGAAGATA GGGTTTAAGG GAATATGGGA GAAAGTGATT GATCTGTCTC CTCTGGGAAG
  CATGCCAATC ACCACTCACA CTTCTTCCAA GTACCCCAAC TCCACCTCTA TCAGAACACC
  AATTCCACAG TATTAGAGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48014715	NES12049577	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31086319					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48014715	NES12049577	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:63548793 () rs orientation: forward

Symbol	Name	Function Class
Rr1380	regulatory region 1380	695 bp distal
Rr307330	regulatory region 307330	1808 bp proximal
Rr390832	regulatory region 390832	within coordinates
Rr406926	regulatory region 406926	126 bp distal
Rr503260	regulatory region 503260	1119 bp distal