rs31086414 SNP Detail

Summary

• ID
  rs31086414
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:119393540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGCCTTTTT TGCGAGGGCC AAGAGTGGTA AACTGGTTTG
  AGCCGCTTCA AGAGACAAAC CAACCGTCAC TCCTGTCTAG CGCTTTGCTG GAGAGAGGCC
  R
  CGACACGGTT TCCTGGTCGC CGCGGGGTCC TCAGCTCCAG CTGATCTTTC CCCTACAGCC
  TGATGGAGCA AGAGAAGGAG GAGGCGAACT CCAGGAAGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45995095	mCV24825117	ABI	CRAMUS_MOUSE	f	SNP		G	A					G		A
ss47184214	NES11599644	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G	A		G	A	G	A	G	G	G	G	G
ss145815742	ENSMUSSNP3727444	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31086414					SNP	G	G	A	G	A	G	A	G	G	A	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47184214	NES11599644	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:119393540 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19637	CpG island 19637	within coordinates
Eri2	exoribonuclease 2	257 bp upstream
Rexo5	RNA exonuclease 5	within coordinates
Rr654660	regulatory region 654660	361 bp distal
Rr654661	regulatory region 654661	297 bp distal
Rr654662	regulatory region 654662	177 bp distal
Rr654663	regulatory region 654663	954 bp proximal
Tssr68757	transcription start site region 68757	565 bp downstream
Tssr68758	transcription start site region 68758	305 bp downstream
Tssr68759	transcription start site region 68759	272 bp downstream
Tssr68760	transcription start site region 68760	160 bp downstream
Tssr68761	transcription start site region 68761	23 bp downstream
Tssr74500	transcription start site region 74500	361 bp upstream
Tssr74501	transcription start site region 74501	325 bp upstream