rs31087714 SNP Detail

Summary

• ID
  rs31087714
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44465194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATCCACA GGGGTTCCCA
  GAATAATTCT GCATGCCTGG GCCCTTCATC AGTGTCACAC ACACAGATCC CGCTCTTCCC
  TTAAAAATTT TGGTGACTTC TAAAGATTCT ACGGGAAGCT CCGCCCACCC TTCTGTCTGT
  CACAGTCAGT TCCCGTCCCC CACTAGCAAG TCCCTAGAGG CCCCGCCCCT GTAGTGCTAG
  Y
  GCTAACTCTT TCTTAAAGGT GTTCCTAAAG CCTTTCCTGT CAGTTTAAGC CAGTCCCCGC
  CCCAGCAGGT GTCTGATTGG AGGGAAGTTG GGCCTGAGTC GGAGCCTCAA GCAAAACCCC
  ACCCTTCCTC GCTGCTGGCT CGACTAGCGA CGAGGCGCAA GCTCAGTCCC AGGACCCGAT
  CCATTGTTAC GCCACTACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45994735	mCV27573932	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss149123025	ENSMUSSNP2759574	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31087714					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44465194 () rs orientation: forward

Symbol	Name	Function Class
Atf5	activating transcription factor 5	within coordinates
Cpgi18994	CpG island 18994	within coordinates
Il4i1b	interleukin 4 induced 1B	600 bp upstream
Nup62	nucleoporin 62	318 bp upstream
Rr400297	regulatory region 400297	2 bp upstream
Rr646219	regulatory region 646219	within coordinates
Rr646220	regulatory region 646220	637 bp proximal
Rr646221	regulatory region 646221	794 bp proximal
Tssr66426	transcription start site region 66426	159 bp upstream
Tssr66427	transcription start site region 66427	520 bp upstream
Tssr66428	transcription start site region 66428	553 bp upstream
Tssr66429	transcription start site region 66429	594 bp upstream
Tssr66430	transcription start site region 66430	616 bp upstream
Tssr72230	transcription start site region 72230	113 bp upstream
Tssr72231	transcription start site region 72231	88 bp upstream
Tssr72232	transcription start site region 72232	139 bp downstream
Tssr72233	transcription start site region 72233	816 bp downstream
Tssr72234	transcription start site region 72234	1184 bp downstream