rs31088245 SNP Detail

Summary

• ID
  rs31088245
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:86172398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATGGAAAGA TAGTCTTAGG ATCAGAGTAG GGTTTCATGT
  GGGCACATGT GCTGTACTCT ATGCAAGTCT GGAAGCGTTG GTGTTGGAGC AGTACTGATG
  Y
  GGAGGCATAT CTGACCACTG GAGTCTGAAG TAACAGTGTA CTTCTGGCCT CTCGAGAATC
  CTTTCTTGCT TTTGAGTATT TTAGGCCATC CAACCTTAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45495847	mCV24949227	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					T		C
ss46731701	NES10758022	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	C		T	C	T	C		T	T	T		T
ss135445657	ENSMUSSNP880230	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss320829446	CHEV_3_86069013	CHEVERUD	SCREENING_POP	f	SNP													C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs31088245					SNP	C	C	C	C	C	T	C	T	T	C	T	C	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46731701	NES10758022	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86172398 () rs orientation: forward

Symbol	Name	Function Class
Btf3-ps12	basic transcription factor 3, pseudogene 12	1516 bp upstream
Lrba	LPS-responsive beige-like anchor	within coordinates
Tssr29784	transcription start site region 29784	1634 bp downstream