rs31088480 SNP Detail

Summary

• ID
  rs31088480
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87826560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAATA TAATATCACT CTTTTCTCTG
  M
  AAAGGCGGGG CATTTTTTTT TAATA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45497313	mCV23484214	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	A	C
ss135468777	ENSMUSSNP3749920	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C		C
ss320835505	CHEV_3_87723175	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31088480					SNP	A	A	C	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87826560 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13346	CpG island 13346	102 bp proximal
Gm64606	predicted gene, 64606	within coordinates
Mrpl24	mitochondrial ribosomal protein L24	253 bp upstream
Rr367453	regulatory region 367453	within coordinates
Tssr29862	transcription start site region 29862	237 bp upstream
Tssr29863	transcription start site region 29863	262 bp upstream
Tssr29864	transcription start site region 29864	275 bp upstream
Tssr29865	transcription start site region 29865	314 bp upstream
Tssr29866	transcription start site region 29866	407 bp upstream
Tssr29867	transcription start site region 29867	440 bp upstream