rs31088504 SNP Detail

Summary

• ID
  rs31088504
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127655036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTTCCTC CCCTCTTCCT
  CTTCCTTTGC CTCCACCCCC TTCTAAGTAT TTCTGTCATT TTTAAAAACT GTCTTTTGTA
  ACAGTTTTTA AGGCTTTTGC AGGCCAGGTT GATGGGAGAA GAAAGCCTGT GTCACAGACC
  TGAGTGTCAG CAATATGGTA CGGGAGGGGG AAAAATGCAG TTTCCATTGC AGAAGCAATT
  W
  TGACCAAACG GCCAGGCACC AAGCTCCTGA GAAATGTCTC TTAGAGCTTG AAAATGAAAT
  GCCTGGGGAG CACTGTACCG GGCCAAGCCC AGCTCTATCT GAACATCTCA TAAATGTCCC
  GACAAGCATA GCCTGACAGC GAAGAAAATG TAGGAGAACC AGTTCTGAAA TGCAGTGAGA
  CGGAATAAAG GAAAGCTCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45497385	mCV24302389	ABI	CRAMUS_MOUSE	f	SNP	A	A	T
ss135873377	ENSMUSSNP3601481	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320957592	CHEV_3_127564305	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31088504					SNP	A	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127655036 () rs orientation: forward

Symbol	Name	Function Class
Gm35585	predicted gene, 35585	within coordinates
Gm43652	predicted gene 43652	1797 bp downstream
Rr584887	regulatory region 584887	11 bp proximal
Rr584888	regulatory region 584888	1126 bp proximal
Tssr31614	transcription start site region 31614	198 bp upstream