rs31088541 SNP Detail

Summary

• ID
  rs31088541
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:163187857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATCTACGTG GTTACTAAGA CAACAGAGAG ACCATTCTGG
  ACCAGAACAT TGCCTTTACT CTGCACATAA CTAAAACCAC AGTTGCAGTA TCTCAACTAA
  Y
  AGGAGGAAAA TTATTTAGAT CCACAAAGAG AAATTGTATA TTTTTATAGT TTTATTCTTG
  AAGGAGCTAT TTGCCTTACT GATGAGTGAT TCTGAAATA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss44995186	mCV23470612	ABI	CRAMUS_MOUSE	f	SNP		C					C		T
ss49730841	NES13050358	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C	T	C	C	T	C	C	C	C
ss145957057	ENSMUSSNP745709	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31088541					SNP	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49730841	NES13050358	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:163187857 () rs orientation: forward

Symbol	Name	Function Class
Rr696	regulatory region 696	666 bp proximal
Rr846	regulatory region 846	45 bp distal
Rr407134	regulatory region 407134	1151 bp proximal
Rr422080	regulatory region 422080	1759 bp distal
Rr422081	regulatory region 422081	1052 bp proximal
Rr422082	regulatory region 422082	1980 bp proximal
Tssr9725	transcription start site region 9725	1901 bp downstream