rs31088597 SNP Detail

Summary

• ID
  rs31088597
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:93437729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACTC AAATGAAATC ATGTTTGAAC
  W
  TGTTACATCA ACTAAAACTA AGAAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39251985	mCV24861729	ABI	CRAMUS_MOUSE	f	SNP	T	A	T	T
ss146667236	ENSMUSSNP6844865	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31088597					SNP	T	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:93437729 () rs orientation: forward

Symbol	Name	Function Class
Gm17922	predicted gene, 17922	1807 bp downstream
Pcdh9	protocadherin 9	within coordinates
Tssr129946	transcription start site region 129946	1813 bp downstream
Tssr129947	transcription start site region 129947	1840 bp downstream
Tssr129948	transcription start site region 129948	1932 bp downstream