rs31088820 SNP Detail

Summary

• ID
  rs31088820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126270253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCACTTGG CCAGAGCTGC
  TCATCTCTTT CCTTCCTGTA CTGTTCTCTA TGGTATGCTT TGGTGACAGT CTGTCACCCT
  CTATATTCCC AGGCCAGCTA CACATTGGAA ACTTGCTTAG CCCCCAGCCT TCCAGGTTTC
  CTCAGGTTCT GTTGCCTTGG CTTCATGACC TCCGCCTTAC CACAGAGGCA ACTCTTTACC
  Y
  TTACTGTGAC CGTGGTAGCA ATTTTTGTTT GTTTTCAGTT GAAGAGGGTG ATGAGCTGAA
  TGTGAGGAGA CCTAGGATCC ACACTAGATA ATCTGTGCAG CTTTTGCTAA AATTACATGC
  ACTGGTAGAA AGGAGATAAA GATGGGTATA CATTTCAGGA ATTGTCATTG GCCCAGCACC
  TCAGTCAGGG GACAGAATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45995223	mCV23683634	ABI	CRAMUS_MOUSE	f	SNP		C	T					C		C
ss47256209	NES11552152	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C		C	C	C	C	C	C	C	C	C
ss145875591	ENSMUSSNP5853206	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31088820					SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47256209	NES11552152	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126270253 () rs orientation: forward

Symbol	Name	Function Class
D930031A20Rik	RIKEN cDNA D930031A20 gene	1928 bp downstream
Sgf29	SAGA complex associated factor 29	within coordinates
Sult1a1	sulfotransferase family 1A, phenol-preferring, member 1	1784 bp downstream