rs31088870 SNP Detail

Summary

• ID
  rs31088870
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122065724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGCAGAC ACTTTCCCTC
  TGAGTCACAT ACAGAACCCA CGCTCAAATG GTCATTTATA TAACTCCCAG GTAGTTTTCC
  TCAGCATGTT TGTTTGTTTG TTTGTTTGTT TGTTTGTTTT TCAAGATAGG GTTTCTCTGT
  GTAGCCCTGG CTGGTCTGGA ACTCACTTTG TAGACCAGGC TGGCCTCGAA CTCAGAAATC
  Y
  GCCTGCCTCT GCCTCCCAAG TACTGGGATT AAAGGCATGT GCTGCCACTG CCCGGCTCTC
  CACACCTGAA GAGAGTGCTC CATCTACTTC CAGAGAATGC ATGTTCTTGC AGATGAACAT
  CTGGATTTTT CTTCCTAGCA GCAATTTGTC CTCTCTCAAT TTTTTTATTA ACGTTTTCTG
  TTTATTTTAG TGTTAGTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45497026	mCV22780981	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	C
ss135737954	ENSMUSSNP3105124	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31088870					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122065724 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13766	CpG island 13766	1948 bp proximal
Gm17494	predicted gene, 17494	within coordinates
Rr584271	regulatory region 584271	1898 bp distal
Rr584272	regulatory region 584272	260 bp distal
Rr584273	regulatory region 584273	1823 bp proximal