rs31089227 SNP Detail

Summary

• ID
  rs31089227
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123601661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTTCAAG GCATAAAAAG
  ATAATGACTA AGATCCCAGA GTGACTTTTT CTCTTTAGAC ACACTAATTA GAACAGCTTT
  TACACTACAA ACTCCCTTCA CAGCAGCTAA GGGAGTGAGG GGTGAGGTCT TGGCACTTGG
  CTTTTTAATA GTAAGAGAAG ATTACAAATA CAAGGCGAGA AGGTAAGGTT TCCTGCTCAC
  Y
  GTCCTTCTAC CTCTAAGTCT ACTGGAGAGA GATGCCTACA ACTTGCAGGA GGGGCAAGAA
  TTAAACACTG CCTTGGACTT GAGATTGTAT CAGGCTTGTC TCTTATGAAA GGCATGCCAG
  GCTGGCCTAC CTACAGATAC TTGCTCCAGG CCATAGGTAT TTTATTGAGC TAGAAGGCTG
  ACTGCATCCA TCAAAGTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45495860	mCV23882616	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		T
ss51028512	NES13904389	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		T	T	T	T	T	T	T	C	C
ss135773734	ENSMUSSNP2827585	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31089227					SNP	C	C	T	T	T	C	T	T	T	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51028512	NES13904389	PERLEGEN	MM_PANEL	f	SNP	C/T