rs31089339 SNP Detail

Summary

• ID
  rs31089339
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:181054824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTTAGATCAA TAGTCACGCT TCTGTGGTGA TGGACCAGTG TGTGCCTCCA GAAACGGCTG
  TGAGCTGAAA CCGCATGTGT GTCCTTAGCA GAGAAGTCAA CGGCTCTGTA GGTCTGCATA
  CCCTCGCCAG AGGGACTCTG CACAGACTTG CTTAGTAAGC AGATAAACAA ACTTTGTGCT
  CGCACATAGC CGGCCGCTAG GCCAGCCTCC ACTCGTTCAC GGGAGCCAGG GGCCTCCTGT
  TTAGCTCCAG ACCCAGCTCT TTTCTCCTGT CACCATTGCC ATTAATATTT TGCTTTTTTT
  Y
  CCCCCTCCCA ATCTGGATTA GATGACAGCC TCCTAAATGC TTTGTGCTGT TTCCTAACTA
  GTTGCCTTTA CTGCTACCAA GATCATTATA GTAAGGAATA AAAACAGTAT CACTTGGAAG
  TGTTTTGGAT GGTTCTCTGT ACATATAAGC CACAATCCAA TATCCAGAGA CTTAGAAGTT
  GGCCTCTTTT TTATGGCCCT CTATCCCTCA CACCAGCTAC CCCAGATCTC CTGCTTTCAG
  AGTGCTTTCA TAGTCTGTGC ATCTGTTGTG ATTTTCCTCA CATGACCATT CCTAAATCCC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss44994326	mCV23624481	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs31089339					SNP	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss146392568	ENSMUSSNP1630696	ENSEMBL	ENSEMBL_Sanger	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181054824 () rs orientation: forward

Symbol	Name	Function Class
A430110L20Rik	RIKEN cDNA A430110L20 gene	within coordinates
Gm38664	predicted gene, 38664	Intron
Gm57146	predicted gene, 57146	within coordinates
Rr424700	regulatory region 424700	12 bp distal
Rr424701	regulatory region 424701	395 bp proximal