rs31089371 SNP Detail

Summary

• ID
  rs31089371
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105838051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGCA TGTCTATGTG AGGGTATTAG
  R
  TCCTCTGGAA CTGGAGTTAC AGATG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J
ss45497403	mCV22894650	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss135578659	ENSMUSSNP4435936	ENSEMBL	ENSEMBL_Sanger	f	SNP			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J
rs31089371					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105838051 () rs orientation: forward

Symbol	Name	Function Class
I830077J02Rik	RIKEN cDNA I830077J02 gene	within coordinates
Rr375531	regulatory region 375531	568 bp downstream
Rr582816	regulatory region 582816	346 bp distal
Rr582817	regulatory region 582817	1655 bp proximal
Rr582818	regulatory region 582818	1919 bp proximal
Tssr34936	transcription start site region 34936	1955 bp upstream
Tssr34937	transcription start site region 34937	510 bp downstream
Tssr34938	transcription start site region 34938	1855 bp downstream
Tssr34939	transcription start site region 34939	1890 bp downstream
Tssr34940	transcription start site region 34940	1903 bp downstream
Tssr34941	transcription start site region 34941	1930 bp downstream
Tssr34942	transcription start site region 34942	1952 bp downstream