rs31089477 SNP Detail

Summary

• ID
  rs31089477
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135145474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCC CGCCGCCGGG ATAATCAAGA
  R
  TTTTGGCCGG ACCTTTGAGT ACACC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45497601	mCV23959334	ABI	CRAMUS_MOUSE	f	SNP		G	A					A		G
ss51652688	NES14652408	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G	A		G	G	G	G	G	G	G	G	A
ss135926100	ENSMUSSNP2859221	ENSEMBL	ENSEMBL_Sanger	f	SNP			A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31089477					SNP	G	G	A	G	A	G	A	A	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51652688	NES14652408	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135145474 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930539J05Rik	RIKEN cDNA 4930539J05 gene			1048 bp upstream
Cpgi13855	CpG island 13855			61 bp distal
Rr367562	regulatory region 367562			1413 bp downstream
Rr367563	regulatory region 367563			1269 bp downstream
Rr398041	regulatory region 398041			462 bp upstream
Rr585708	regulatory region 585708			1673 bp distal
Rr585709	regulatory region 585709			1469 bp distal
Rr585710	regulatory region 585710			1138 bp distal
Rr585711	regulatory region 585711			492 bp distal
Rr585712	regulatory region 585712			347 bp distal
Rr585713	regulatory region 585713			within coordinates
Rr585714	regulatory region 585714			1155 bp proximal
Tssr1058	transcription start site region 1058			549 bp downstream
Tssr31809	transcription start site region 31809			1587 bp downstream
Tssr31810	transcription start site region 31810			1560 bp downstream
Tssr31811	transcription start site region 31811			1410 bp downstream
Tssr31812	transcription start site region 31812			1323 bp downstream
Tssr31813	transcription start site region 31813			1261 bp downstream
Tssr31814	transcription start site region 31814			1228 bp downstream
Tssr31815	transcription start site region 31815			1173 bp downstream
Tssr31816	transcription start site region 31816			1129 bp downstream
Tssr31817	transcription start site region 31817			933 bp downstream
Tssr31818	transcription start site region 31818			660 bp downstream
Tssr31819	transcription start site region 31819			650 bp downstream
Tssr31820	transcription start site region 31820			615 bp downstream
Tssr31821	transcription start site region 31821			539 bp downstream
Tssr31822	transcription start site region 31822			273 bp downstream
Tssr31823	transcription start site region 31823			244 bp downstream
Tssr31824	transcription start site region 31824			213 bp downstream
Tssr35782	transcription start site region 35782			1707 bp upstream
Tssr35783	transcription start site region 35783			1075 bp upstream
Tssr35784	transcription start site region 35784			1008 bp upstream
Tssr35785	transcription start site region 35785			658 bp downstream
Ube2d3	ubiquitin-conjugating enzyme E2D 3			mRNA-UTR
				Noncoding-Transcript-Variant