rs31089821 SNP Detail

Summary

• ID
  rs31089821
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122035790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACAGGACAT CTTGAAAGAT GTTGCACAGT TATCTGGGAG
  TTCTATGATC TTGTAGAACA AGGGGGAAGA TATCCTCTGC TTTAATTTCT CTGACCAGAT
  Y
  AGTGTAGGTT TTCAAGTATG GTTTTTGAAC TCCCAGATGG CCAGTTGTAC CAATTTGTTA
  TTTTTAATTA ATATGTAATG TTATGGTAAA GTTTAACCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45496840	mCV25132669	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss135737706	ENSMUSSNP6235554	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
ss320909861	CHEV_3_121945059	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31089821					SNP	C	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122035790 () rs orientation: forward

Symbol	Name	Function Class
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	963 bp upstream
Rr375675	regulatory region 375675	619 bp upstream
Rr584261	regulatory region 584261	601 bp proximal
Rr584262	regulatory region 584262	974 bp proximal
Rr584263	regulatory region 584263	1057 bp proximal
Rr584264	regulatory region 584264	1712 bp proximal
Tssr31477	transcription start site region 31477	962 bp upstream