rs31090099 SNP Detail

Summary

• ID
  rs31090099
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:173257580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAG CTGGCAACAA AGGAATTTAT
  R
  TAGCCTGATG AAGAAGAAAC AGAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44994806	mCV22639910	ABI	CRAMUS_MOUSE	f	SNP		A	A				G		A
ss49756374	NES13024241	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A		G	A	A		A	A	G	A		A
ss146223196	ENSMUSSNP5738356	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A
ss320132469	CHEV_1_175360145	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31090099					SNP	A	A	A	A	A	A	G	G	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49756374	NES13024241	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:173257580 () rs orientation: forward

Symbol	Name	Function Class
Aim2	absent in melanoma 2	Intron
Gm70266	predicted gene, 70266	within coordinates
Gm70269	predicted gene, 70269	1128 bp upstream
Rr372470	regulatory region 372470	1193 bp upstream
Rr423699	regulatory region 423699	72 bp proximal
Rr423700	regulatory region 423700	175 bp proximal