rs31090378 SNP Detail

Summary

• ID
  rs31090378
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:105865438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTT GGAGAAAGCA GGGCTGGCAT
  K
  AACAGTACAT AAAAAAAGAC CCAAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45497412	mCV23787033	ABI	CRAMUS_MOUSE	f	SNP	T	T	G					T		T
ss46843868	NES10700398	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	T	T	T		G	T	T	T	G	T	T	G	G
ss135578768	ENSMUSSNP5247111	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31090378					SNP	T	T	G	T	T	T	T	T	G	T	T	T	G	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46843868	NES10700398	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105865438 () rs orientation: forward

Symbol	Name	Function Class
Atp5pb	ATP synthase peripheral stalk-membrane subunit b	Intron
Cpgi13663	CpG island 13663	653 bp proximal
Gm42890	predicted gene 42890	1381 bp upstream
Rr582821	regulatory region 582821	757 bp proximal
Rr582822	regulatory region 582822	1622 bp proximal
Rr582823	regulatory region 582823	1967 bp proximal
Tssr997	transcription start site region 997	1077 bp downstream
Tssr31092	transcription start site region 31092	1288 bp upstream
Tssr31093	transcription start site region 31093	1331 bp upstream
Tssr34944	transcription start site region 34944	1090 bp downstream
Tssr34945	transcription start site region 34945	1130 bp downstream
Wdr77	WD repeat domain 77	1376 bp upstream