rs31090541 SNP Detail

Summary

• ID
  rs31090541
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55294274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATAG ATCATTTCAG CGGGAGTTTC
  Y
  GATTCACTTG GTGTAGAGTG TGGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39253129	mCV25265951	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss139576742	ENSMUSSNP4391646	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss324641945	CHEV_14_55675654	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31090541					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55294274 () rs orientation: forward

Symbol	Name	Function Class
Rr492411	regulatory region 492411	1314 bp distal
Rr492412	regulatory region 492412	1410 bp distal
Rr492413	regulatory region 492413	684 bp distal
Tssr125746	transcription start site region 125746	1942 bp downstream
Tssr125747	transcription start site region 125747	1139 bp downstream
Tssr125748	transcription start site region 125748	942 bp downstream