rs31091219 SNP Detail

Summary

• ID
  rs31091219
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30253198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGTGTCCCT TGAGTGCGGT ATTCTGAGCC CCTCCCCCCC
  CCCCCCCCCG TTACTGATCT TCTGAGGGGG TGAAGGGTGG GGCAAGTGAG CCGGGAATCT
  R
  GGGGAAAGGA CAAGTGAGTC CCGACGGGCT GTAATGTTCC TAGGGTTGCA TATGGTGATG
  CTGCATCTTC AAGAGGGATC CTGTGATTTG ATGAAGGGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45995621	mCV25394722	ABI	CRAMUS_MOUSE	f	SNP		G	A
ss148682331	ENSMUSSNP201070	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss322135216	CHEV_7_31338792	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31091219					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30253198 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18808	CpG island 18808	1122 bp distal
Cpgi18809	CpG island 18809	239 bp distal
Cpgi18810	CpG island 18810	453 bp proximal
Hspb6	heat shock protein, alpha-crystallin-related, B6	within coordinates
Lin37	lin-37 DREAM MuvB core complex component	1668 bp downstream
Mir9769	microRNA 9769	869 bp downstream
Proser3	proline and serine rich 3	1474 bp upstream
Rr400242	regulatory region 400242	1281 bp downstream
Rr644846	regulatory region 644846	1517 bp distal
Rr644848	regulatory region 644848	1011 bp distal
Rr644849	regulatory region 644849	495 bp distal
Rr644850	regulatory region 644850	272 bp distal
Tssr65779	transcription start site region 65779	1209 bp downstream
Tssr65780	transcription start site region 65780	501 bp downstream
Tssr65781	transcription start site region 65781	464 bp downstream
Tssr65782	transcription start site region 65782	999 bp upstream
Tssr65783	transcription start site region 65783	1074 bp upstream
Tssr65784	transcription start site region 65784	1098 bp upstream
Tssr65785	transcription start site region 65785	1150 bp upstream
Tssr65786	transcription start site region 65786	1168 bp upstream
Tssr65787	transcription start site region 65787	1262 bp upstream
Tssr71787	transcription start site region 71787	1457 bp upstream
Tssr71788	transcription start site region 71788	1398 bp upstream
Tssr71789	transcription start site region 71789	892 bp downstream
Tssr71790	transcription start site region 71790	1004 bp downstream