rs31092090 SNP Detail

Summary

• ID
  rs31092090
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164267959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAA CTGGCTTCGG GCTTCCTTCA
  K
  AAACCACAGC AGTTCCTCCT TTTGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44995028	mCV24721518	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	T	G
ss145978660	ENSMUSSNP5498087	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		G
ss320086029	CHEV_1_166370521	CHEVERUD	SCREENING_POP	f	SNP						T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31092090					SNP	T	T	T	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164267959 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	within coordinates
Rr13721	regulatory region 13721	1759 bp distal
Rr20253	regulatory region 20253	559 bp distal
Rr25446	regulatory region 25446	1970 bp distal
Rr25447	regulatory region 25447	1474 bp distal
Rr25448	regulatory region 25448	999 bp distal
Rr31656	regulatory region 31656	within coordinates
Tssr9784	transcription start site region 9784	1883 bp downstream
Tssr14740	transcription start site region 14740	1970 bp upstream
Tssr14741	transcription start site region 14741	1893 bp upstream
Tssr14742	transcription start site region 14742	1851 bp upstream
Tssr14743	transcription start site region 14743	1168 bp downstream
Tssr14744	transcription start site region 14744	1217 bp downstream