rs31092202 SNP Detail

Summary

• ID
  rs31092202
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5651569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCT AGAGCACGTG CTTAATATGT
  Y
  CAAGGCCCTG AGTCCAATCC TCATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss44994669	mCV25320793	ABI	CRAMUS_MOUSE	f	SNP	C	C	T				C
ss50578384	NES13651101	PERLEGEN	MM_PANEL2	f	SNP			T	T	C	C	C		C	C	C
ss146012742	ENSMUSSNP3603964	ENSEMBL	ENSEMBL_Sanger	f	SNP			T				C
ss325717123	CHEV_19_5601541	CHEVERUD	SCREENING_POP	f	SNP								C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs31092202					SNP	C	C	T	T	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50578384	NES13651101	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5651569 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10461	CpG island 10461	152 bp proximal
Kat5	K(lysine) acetyltransferase 5	1473 bp downstream
Rnaseh2c	ribonuclease H2, subunit C	332 bp upstream
Rr370434	regulatory region 370434	235 bp upstream
Tssr154457	transcription start site region 154457	300 bp upstream
Tssr154458	transcription start site region 154458	313 bp upstream