rs31092413 SNP Detail

Summary

• ID
  rs31092413
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:4524612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATTC ACTGCTAACC ACTACGCTCA
  S
  GCCTAAACCT TGCTGTAGGC AAGTT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45995469	mCV22879947	ABI	CRAMUS_MOUSE	f	SNP		C	G					C
ss60964943	NES16164650	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	G	C	G		C	G	G	G		C	G	C		C
ss148179429	ENSMUSSNP2612021	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G
ss322094963	CHEV_7_4473215	CHEVERUD	SCREENING_POP	f	SNP													C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31092413					SNP	C	C	G	G	G	C	G	C	C	G	G	G	C	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60964943	NES16164650	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:4524612 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18237	CpG island 18237	within coordinates
Dnaaf3	dynein, axonemal assembly factor 3	1320 bp downstream
Rr641975	regulatory region 641975	163 bp distal
Rr641976	regulatory region 641976	905 bp proximal
Tnni3	troponin I, cardiac 3	within coordinates
Tssr64335	transcription start site region 64335	1131 bp downstream
Tssr64336	transcription start site region 64336	57 bp upstream
Tssr64337	transcription start site region 64337	200 bp upstream
Tssr70484	transcription start site region 70484	263 bp downstream
Tssr70485	transcription start site region 70485	814 bp downstream
Tssr70486	transcription start site region 70486	1186 bp downstream
Tssr70487	transcription start site region 70487	1203 bp downstream