rs31093878 SNP Detail

Summary

• ID
  rs31093878
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:26836745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGG CCCGTCCTGC GGGGGGTCCC
  Y
  GGGCCCGCCT CCCGCCCACG TGGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39253162	mCV22747342	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss139210891	ENSMUSSNP2375743	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss324569422	CHEV_14_27927974	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31093878					SNP	T	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:26836745 () rs orientation: forward

Symbol	Name	Function Class
Arhgef3	Rho guanine nucleotide exchange factor 3	111 bp upstream
Cpgi6253	CpG island 6253	within coordinates
Rr287891	regulatory region 287891	745 bp distal
Rr296929	regulatory region 296929	within coordinates
Tssr124726	transcription start site region 124726	59 bp upstream
Tssr124727	transcription start site region 124727	107 bp upstream
Tssr124728	transcription start site region 124728	370 bp upstream