rs31094054 SNP Detail

Summary

• ID
  rs31094054
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:65022096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAAGTCAAG TATTTTGTAA CTCTAAGCCA GCTGAACCAG
  AAAAGAGCAT CGTGCAAACC AAACCCTGTT TCTCGGCATG TAGGAAAACA GTTAAAGTCA
  R
  TTTTGTTTTT TGTTTTGTTT TGTTTTAGTT GTGGTGTGTG TAGTTATTTC ACAGGCAAAG
  TGTCCTGTGT TCTCTCAAAG GGGGTGATTA AATTTATCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45996030	mCV23737699	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	A
ss144901094	ENSMUSSNP2717639	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31094054					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:65022096 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19209	CpG island 19209	754 bp distal
Gm57226	predicted gene, 57226	within coordinates
Rr647945	regulatory region 647945	1344 bp distal
Rr647946	regulatory region 647946	1035 bp distal
Rr647947	regulatory region 647947	409 bp distal
Rr647948	regulatory region 647948	1026 bp proximal
Tjp1	tight junction protein 1	Intron
Tssr67032	transcription start site region 67032	915 bp downstream
Tssr72804	transcription start site region 72804	1464 bp upstream
Tssr72805	transcription start site region 72805	1448 bp upstream
Tssr72806	transcription start site region 72806	1400 bp upstream
Tssr72807	transcription start site region 72807	1061 bp upstream