rs31094285 SNP Detail

Summary

• ID
  rs31094285
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27857967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTGAGAGC CCACGGGAGT
  CCTGAGTCTC ACAGTCACTG GCCCTTCCCA CAGACTCTGT ATTTTCTCAC ATCCTCAGTG
  CAAGGCCAGA GGCAATAGAT GCCCCCCCCA ACTACACACC TATTTCCAAA TTATTGGATA
  ACAACAAGTC CCCTCAGATG CCCCGTGCCA AAGCAATGGT CCTTAGCACT TTAGTAAAGA
  R
  CCTTTTCTCC TTCAGTTTCC TATTAATACC TAGACCCAGA GTCCCATCAG CTACCCAAAG
  GAACTGAAAG AGTCCCAGTT TGACTGTGGA CACCATCACT AGCTCAAACA GTAGGCTAGG
  TCATGCACTC TGTGCTCTCT GAGCTTACCC TGGTGGCCCT CAAGGTCTCT GCACCAGCCG
  GATTTCCAAC TGAAATCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45995559	mCV25404506	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					G		G
ss51887363	NES14907202	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G	G	G	G	G	A	G	G
ss148632256	ENSMUSSNP360658	ENSEMBL	ENSEMBL_Sanger	f	SNP			G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31094285					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51887363	NES14907202	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27857967 () rs orientation: forward

Symbol	Name	Function Class
Fcgbpl1	Fc fragment of IgG binding protein like 1	within coordinates
Rr170292	regulatory region 170292	1967 bp distal
Rr170293	regulatory region 170293	610 bp proximal
Tssr2161	transcription start site region 2161	1516 bp downstream
Tssr65423	transcription start site region 65423	1813 bp downstream
Tssr65424	transcription start site region 65424	1808 bp downstream
Tssr65425	transcription start site region 65425	1468 bp downstream
Tssr65426	transcription start site region 65426	1007 bp downstream
Tssr65427	transcription start site region 65427	978 bp downstream
Tssr65428	transcription start site region 65428	961 bp downstream
Tssr65429	transcription start site region 65429	948 bp downstream
Tssr65430	transcription start site region 65430	902 bp downstream
Tssr65431	transcription start site region 65431	888 bp downstream
Tssr65432	transcription start site region 65432	865 bp downstream
Tssr65433	transcription start site region 65433	753 bp downstream
Tssr65434	transcription start site region 65434	693 bp downstream
Tssr65435	transcription start site region 65435	546 bp downstream
Tssr65436	transcription start site region 65436	884 bp upstream
Tssr65437	transcription start site region 65437	938 bp upstream