rs31094824 SNP Detail

Summary

• ID
  rs31094824
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6096047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCACCTCCG GTTCTGTATT CACTGTCCGT GTTGTGACTC
  CCACAGTATA AATTCCTCCA GTTGATCTTC ATGAATTCTT ATATTTGATC CCCCCCCCCC
  Y
  TAGGCCTCTG AATTCCGAGT GAGTCCGAGT TAAAAATGGG AGGAGCACCC TCTAGCTGAT
  AAACCTGGGT AATGAGGTGT CCGCTTTCAG TTTCCATTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss44996079	mCV24718640	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31094824					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6096047 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10491	CpG island 10491	197 bp proximal
D530017H19Rik	RIKEN cDNA D530017H19 gene	within coordinates
Gm8034	predicted gene 8034	1195 bp upstream
Gm59262	predicted gene, 59262	85 bp upstream
Rr370438	regulatory region 370438	291 bp upstream
Rr405816	regulatory region 405816	1536 bp downstream
Rr405817	regulatory region 405817	within coordinates
Rr543275	regulatory region 543275	1577 bp distal
Rr543276	regulatory region 543276	1713 bp distal
Rr543277	regulatory region 543277	within coordinates
Rr543278	regulatory region 543278	42 bp proximal
Rr543279	regulatory region 543279	656 bp proximal
Rr543280	regulatory region 543280	995 bp proximal
Rr543281	regulatory region 543281	1098 bp proximal
Rr543282	regulatory region 543282	1291 bp proximal
Rr543283	regulatory region 543283	1354 bp proximal
Rr543284	regulatory region 543284	1402 bp proximal
Syvn1	synovial apoptosis inhibitor 1, synoviolin	559 bp upstream
Tssr154538	transcription start site region 154538	87 bp upstream
Tssr154539	transcription start site region 154539	612 bp upstream
Tssr154540	transcription start site region 154540	1004 bp upstream
Tssr154541	transcription start site region 154541	1038 bp upstream
Tssr154542	transcription start site region 154542	1064 bp upstream
Tssr157816	transcription start site region 157816	1116 bp upstream
Tssr157817	transcription start site region 157817	931 bp downstream
Tssr157818	transcription start site region 157818	1393 bp downstream