rs31097318 SNP Detail

Summary

• ID
  rs31097318
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:81356132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTTTCCTCTT GTGGAGAGCA AGCACACAAA CCATATCTCG CATAGAGACT GAAACACCAT
  GAGTGTGCGC TCACATCGGC GAGCAGATGT AAAGAGTTAC TGTGTTATTA GCACAGTGGC
  TCCTGACTCA CAGCGCCTAC TGCTCGGAGA GACGCCGAAG AGAAATCAAT CCTGCTTTTA
  AAATTACTTT ATATACTCAG GAGCATTAGT CACTTCAACT GAGTGCTCCA ACTTCCCTCC
  CAAGCATCTG GAGCCTCACC TAGGTGCCTA ACAGATTGTC GCCGTTCTCA GCCATCTCAA
  Y
  GCTGCCTACA AGTCCACTAT TCCTACGCTG AAGGGTTATT ATTGGGTGTG TTTCCTTTCC
  AGGAAAACTT CGATTTCTAT GTCGCTGGCT GTAAATGCAG CCGTGAAGAA AGGCAAACTG
  CTTTTCACAC TCACAAACCC AGGCCCTGGA GTTGCTCGCG CTAGGGGCAA GGAGACCGCG
  GAATGGCCGA GGCGCCGAGA CCAGCCCGGG TGCGGGTCCC CGCCAGGTGT CTCCGCGCCC
  GGCTGGCTGA GACGGGAAGG GCCTGGGCTC CAGGCGCAAA GTCCGCGCC            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45996642	mCV23900222	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss145163558	ENSMUSSNP1099845	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31097318					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:81356132 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19358	CpG island 19358			within coordinates
Gm32579	predicted gene, 32579			1768 bp downstream
Homer2	homer scaffolding protein 2			Intron
				Noncoding-Transcript-Variant
Rr650185	regulatory region 650185			within coordinates
Rr650186	regulatory region 650186			415 bp proximal
Tssr73349	transcription start site region 73349			473 bp downstream
Tssr73350	transcription start site region 73350			506 bp downstream
Tssr73351	transcription start site region 73351			521 bp downstream
Tssr73352	transcription start site region 73352			698 bp downstream