rs31100398 SNP Detail

Summary

• ID
  rs31100398
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79896394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCAACGCC CAGGAAGAGC CGCAGCGAAC GAGCGGCGGC
  CATGAGCGAC CAGCTGAGTC CAGCCCCGAG CCGATAGGGG CAGCTCCAGC AGCCCCTGAG
  Y
  TCTCCTCGAA ACCTCGGGTG GGCAGTGTCT GCCGTGGGTT TCCTTTCCTC TATTGTAACC
  CAAAGAGTCT TAGCTATTAG AGGCCCAACC CCAAACGCG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45997332	mCV25198377	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31100398					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79896394 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19326	CpG island 19326	within coordinates
Gm73873	predicted gene, 73873	148 bp upstream
Rr165873	regulatory region 165873	1398 bp distal
Rr168083	regulatory region 168083	within coordinates
Rr400401	regulatory region 400401	150 bp downstream
Tssr2310	transcription start site region 2310	282 bp downstream
Tssr67422	transcription start site region 67422	275 bp downstream
Tssr67423	transcription start site region 67423	217 bp downstream
Tssr67424	transcription start site region 67424	212 bp downstream
Tssr67425	transcription start site region 67425	190 bp downstream
Tssr67426	transcription start site region 67426	126 bp downstream
Tssr67427	transcription start site region 67427	67 bp downstream
Ttll13	tubulin tyrosine ligase-like family, member 13	within coordinates