rs31100651 SNP Detail

Summary

• ID
  rs31100651
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:120234826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCAGGCC TGGGTCTGCC
  CTTCAGGTAA ACCCCGCGGA GAAGGGGGCT GCCAGCGAGC CGAGGCCTGG GAGGCTCGGC
  GGGTCCTGTG AGCAGCCGAG AGCTAACGCG GGGAAAGCGG AAGAGGAGGG TGGCCTGGAG
  AGTGGCGGAG AAGCGGCTCT CGGGAGATTC CTGAAGGTCA CTCGAGAAGC AGGTAGGGTG
  K
  AGGCCAACGC CACCCGGGCC GCCTGCTTCC CCTACCTACG ACCTCTGCCC CTGGGTTGAT
  CCCGAGGCGT CGGTTTCCCC AATGCGTGCG AGTTTATTAA ATTCACAAAC GCGGTGCGCT
  GCTTATCTCA GTGCCGGCAC CTTCGTTCCT GTCAGTACTC AGTCCCCGCA TTCCTTAAGA
  TGCTCGTTTT CTCGGGGTCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45997537	mCV22887061	ABI	CRAMUS_MOUSE	f	SNP		T	G				T		T
ss47191771	NES11592715	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	T	T		G	T	T	T	G	T	T	G	T
ss145823110	ENSMUSSNP1558297	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31100651					SNP	T	T	G	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47191771	NES11592715	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:120234826 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19646	CpG island 19646	within coordinates
Gm45112	predicted gene 45112	717 bp upstream
Rr654736	regulatory region 654736	417 bp distal
Rr654737	regulatory region 654737	within coordinates
Tssr68788	transcription start site region 68788	352 bp downstream
Uqcrc2	ubiquinol cytochrome c reductase core protein 2	within coordinates