rs31100880 SNP Detail

Summary

• ID
  rs31100880
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24099071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTGAAGCCA GCCACCTCCA TTCACGCATG CTCAGTCTAA
  CGCGCACGTT GGGTTCGCTT GCGCGCCCAG CCCGCGGCGC ATGCGCCGAG CTAGCAGCGC
  R
  GGCCGTGACT CGTTGGGCTG CGTACTGTGG CTTCCTCTTC TTCCTCCTCT GGGAGCTTCC
  GGGACGCCAA GGCCTGTTCC GGAATAGCCG GCACCCGTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45996942	mCV25416434	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss322120427	CHEV_7_25184665	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31100880					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24099071 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18537	CpG island 18537	within coordinates
Gm74022	predicted gene, 74022	within coordinates
Rr643436	regulatory region 643436	1397 bp distal
Rr643437	regulatory region 643437	17 bp distal
Rr643438	regulatory region 643438	within coordinates
Rr643439	regulatory region 643439	279 bp proximal
Rr643440	regulatory region 643440	927 bp proximal
Smg9	SMG9 nonsense mediated mRNA decay factor	35 bp upstream
Tssr64959	transcription start site region 64959	within coordinates
Tssr64960	transcription start site region 64960	28 bp upstream
Tssr64961	transcription start site region 64961	167 bp upstream
Tssr64962	transcription start site region 64962	313 bp upstream
Tssr64963	transcription start site region 64963	331 bp upstream
Tssr64964	transcription start site region 64964	367 bp upstream
Tssr71075	transcription start site region 71075	212 bp downstream