rs31101462 SNP Detail

Summary

• ID
  rs31101462
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121137702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTACATT TAGAAACTTT
  AGCCTGTCTT CTCATAAGTA AATGCATCCA TGGGAAAAAT ATGCCTGAGG GGCGTGATTC
  TTTTCTTCCT TCTCCTCTTC CTCCTCCTCT TCCTCTTCCT CCTCAACTTC TCTCTCTCTC
  TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTGTCTCTC TCTCTCTCTC CCCCCCCCCC
  Y
  GTACATTAAA AAGTACTCAT TCTAAAAGAA CAATAAAACT CCTTTAAAGT CTATGTCCAG
  TGTGGAGAAT TCTGTGCCCT GAAGCATCTA TATTTTGGGT TTTGACTGAT AGCTCGCTAA
  GTGTGAGTGG AGAGTCACAT CCTCTGGTTG TGGTGGTGAA AGACAGCAGG CTCTGTCCAG
  CCCGGGTACT GAGCTGGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss45499643	mCV27562810	ABI	CRAMUS_MOUSE	f	SNP	C
ss135718898	ENSMUSSNP3770909	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320903102	CHEV_3_121046971	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs31101462					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121137702 () rs orientation: forward

Symbol	Name	Function Class
Alg14	asparagine-linked glycosylation 14	within coordinates
Gm33310	predicted gene, 33310	900 bp upstream
Gm66111	predicted gene, 66111	691 bp upstream
Rr367544	regulatory region 367544	967 bp upstream
Tssr35413	transcription start site region 35413	716 bp upstream
Tssr35414	transcription start site region 35414	682 bp upstream