rs31101462 SNP Detail

Summary

• ID
  rs31101462
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121137702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTACATT TAGAAACTTT
  AGCCTGTCTT CTCATAAGTA AATGCATCCA TGGGAAAAAT ATGCCTGAGG GGCGTGATTC
  TTTTCTTCCT TCTCCTCTTC CTCCTCCTCT TCCTCTTCCT CCTCAACTTC TCTCTCTCTC
  TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTGTCTCTC TCTCTCTCTC CCCCCCCCCC
  Y
  GTACATTAAA AAGTACTCAT TCTAAAAGAA CAATAAAACT CCTTTAAAGT CTATGTCCAG
  TGTGGAGAAT TCTGTGCCCT GAAGCATCTA TATTTTGGGT TTTGACTGAT AGCTCGCTAA
  GTGTGAGTGG AGAGTCACAT CCTCTGGTTG TGGTGGTGAA AGACAGCAGG CTCTGTCCAG
  CCCGGGTACT GAGCTGGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss45499643	mCV27562810	ABI	CRAMUS_MOUSE	f	SNP	C
ss135718898	ENSMUSSNP3770909	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320903102	CHEV_3_121046971	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs31101462					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121137702 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alg14	asparagine-linked glycosylation 14			Intron
				Noncoding-Transcript-Variant
Gm33310	predicted gene, 33310			900 bp upstream
Gm66111	predicted gene, 66111			691 bp upstream
Rr367544	regulatory region 367544			967 bp upstream
Rr584050	regulatory region 584050			702 bp distal
Rr584051	regulatory region 584051			216 bp distal
Rr584052	regulatory region 584052			101 bp proximal
Tssr35413	transcription start site region 35413			716 bp upstream
Tssr35414	transcription start site region 35414			682 bp upstream