rs31102012 SNP Detail

Summary

• ID
  rs31102012
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122362253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTATTATAC AACAAAAAAA ATTGGCAGAT TATGAATAAT
  AGCTCACCTA CTACACAGCC CACAGATTGA GACCTGGACA CAGCCTCCAG GAGCAGGTGT
  S
  GGGGGACGGG GGACGGCTTG GTGGGCAATG GCACTGCTGC TAAACCTAAT GCACTGAGAA
  TCATGGGACC AAGATGTGAC GCTTCATGGG GCTTAGGGC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45500228	mCV22967140	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	C
ss135744550	ENSMUSSNP1721514	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		C		C
ss320912819	CHEV_3_122271522	CHEVERUD	SCREENING_POP	f	SNP					G		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs31102012					SNP	G	G	G	C	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122362253 () rs orientation: forward

Symbol	Name	Function Class
Fnbp1l	formin binding protein 1-like	within coordinates
Gm43569	predicted gene 43569	within coordinates
Rr74164	regulatory region 74164	within coordinates
Rr78947	regulatory region 78947	1653 bp distal
Tssr31506	transcription start site region 31506	1865 bp downstream
Tssr35455	transcription start site region 35455	181 bp downstream
Tssr35456	transcription start site region 35456	1106 bp downstream