rs31102493 SNP Detail

Summary

• ID
  rs31102493
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:22532798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAAAGAGAC AATTTTCTGA CACAGGGGAG TGATCATAAT
  TATTCAAAAG ATGTTTTCTA AAACTTTATT TTAATCTATA GTCTGGTCTA AGAGACTGCA
  R
  TATTGGGCTT GCCTGGACCC AAGGAGTAAC ATAAGCACTC AGCATATGAA GACATATTTC
  TGAATGTTTT ACTTACATCC TAAACTGCAT ACAACTCTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45997561	mCV23506704	ABI	CRAMUS_MOUSE	f	SNP	A	A					G
ss48354577	NES12250136	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	G	G		A	G	G	A	G	G	A	A
ss145304008	ENSMUSSNP1147683	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31102493					SNP	A	A	G	A	G	G	G	A	G	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48354577	NES12250136	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:22532798 () rs orientation: forward

Symbol	Name	Function Class
Gm7072	predicted gene 7072	within coordinates
Gm53992	predicted gene, 53992	1105 bp upstream
Rr392409	regulatory region 392409	1004 bp downstream
Rr523017	regulatory region 523017	443 bp proximal
Rr523018	regulatory region 523018	1010 bp proximal
Tssr146602	transcription start site region 146602	977 bp downstream
Tssr146603	transcription start site region 146603	997 bp downstream