rs31102977 SNP Detail

Summary

• ID
  rs31102977
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9672503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGCACAA ATCATGGCCC
  CTGTGTCATG CTTATTTTAT CCATTTGTCA GCTGCTGTGA CGCAGTGAAT TATGTGTAAG
  AATTCCAAAG TCATGCCCTA CTGTGTTCTA GATTAGCACC TGGCACAAAG TAGGTGCTCA
  ATAAGTATCT GTCGAACACA TGACATATAG AAATGTAAAT TTATTTGTTA TGTTCCATTA
  W
  AAAAAATCTC TTGGGATACA GTGTCAGGAT ATCTCTAAGG TGATGAAAAA AAAGAAGATA
  AATTATACCA CAGTATATTC AGCATGTAAC TTCTAAGAAG TTGTATGCAA TGTACTATAA
  AATTTGTGAG CAAAGCAATG TGTTAGAAAT TTGAAAAAAT TTGAATTTAT TTGGAGATGT
  GAAAAATCTC TGCTAATGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45499932	mCV23605681	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A	A
ss134576766	ENSMUSSNP2443276	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T		A
ss320651674	CHEV_3_9607443	CHEVERUD	SCREENING_POP	f	SNP						A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31102977					SNP	A	A	T	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9672503 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12974	CpG island 12974	1151 bp proximal
Gm56803	predicted gene, 56803	1320 bp upstream
Rr78141	regulatory region 78141	297 bp proximal
Tssr28346	transcription start site region 28346	1360 bp upstream
Tssr28347	transcription start site region 28347	1383 bp upstream
Zfp704	zinc finger protein 704	within coordinates