rs31103174 SNP Detail

Summary

• ID
  rs31103174
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44839476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCCTAGG ATGTGGCATG
  TGGATTCTGA CGCAAGAGCC TGTTCTCAGC AACTCCAGCG CTGACTCGGG TACAGGGAGG
  TGAGTACACG TTCCGCACCT TCAAAGCGTC CTTCTCTGTG GCCAACTCCT CACTCCGCCT
  TTTCACTCCA TCTCTCTCAG CTAGCAGCTT CTCATTCTGC AGGGAGGACA GCCATGCTCA
  S
  CAACCAGGAG TGTGAGGTGG ACAGCTGCCA TTCACTGCCA TGGCTGCTCT CCAGGCAGCC
  CCTTTCTTCC ATCACCCTGA AGGGAGGGAC CTTGTCTGCC CTTTCTCCAT AGGTGGTTTC
  CCCACCAATG AGGTGATACC TAGATTGTAT GAGGTCCCTG GGAGCTAAAT GAGTGAATGA
  GTACATCTAA GTACTTTGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss45997360	mCV27567954	ABI	CRAMUS_MOUSE	f	SNP	C	G	C					C	C
ss51480571	NES13972258	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	C	C	G	C	G	C
ss149131049	ENSMUSSNP756586	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31103174					SNP	C	G	C	C	C	C	C	C	C	C	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51480571	NES13972258	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44839476 () rs orientation: forward

Symbol	Name	Function Class
Gm31097	predicted gene, 31097	within coordinates
Kash5	KASH domain containing 5	within coordinates
Rr646366	regulatory region 646366	1649 bp proximal
Tssr72334	transcription start site region 72334	1339 bp upstream
Tssr72335	transcription start site region 72335	486 bp upstream
Tssr72336	transcription start site region 72336	402 bp upstream
Tssr72337	transcription start site region 72337	339 bp upstream
Tssr72338	transcription start site region 72338	243 bp upstream