rs31103292 SNP Detail

Summary

• ID
  rs31103292
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:55595811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATAC GCCATGTCCA ACATTTATGG
  R
  ATAGTTCTCA TATAAGGTTG CTTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss46480457	mCV27569645	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31103292					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:55595811 () rs orientation: forward

Symbol	Name	Function Class
Ct45a	cancer/testis antigen 45	845 bp upstream
Tssr163412	transcription start site region 163412	907 bp upstream
Tssr163413	transcription start site region 163413	846 bp upstream
Tssr163414	transcription start site region 163414	829 bp upstream
Tssr163415	transcription start site region 163415	772 bp upstream
Tssr163416	transcription start site region 163416	748 bp upstream
Tssr163417	transcription start site region 163417	734 bp upstream